./iterations/neb0_image03_iter46.sci output for 42: 3.3A-->1.3A 712(amd-3) Si-CH3H...HO-Si two dimer closed (TSS for CH3...OH)
Status: finished#MD System 2.0 @Title neb0_image03 @Columns AsymmetricAtom AtomicNumber int 0 Connections string {{}} Fractional double {{0.0 0.0 0.0}} Name string {{}} Site int 1 WyckoffPosition int -1 @end @data 6 {} {0.361895483722 0.556208730908 0.413197693781} C1 1 1 14 {} {0.338637727414 0.529799316757 0.523906359632} Si1 2 1 14 {} {0.423478999213 0.566767001943 0.409048463431} Si2 3 1 8 {} {0.35181317826 0.586461541226 0.599870838143} O1 4 1 8 {} {0.283503051981 0.528454349625 0.516722041948} O2 5 1 6 {} {0.357402955059 0.444490052803 0.558599462593} C2 6 1 6 {} {0.454487603967 0.486283237493 0.394367592966} C3 7 1 8 {} {0.436526703735 0.60161199878 0.508027940426} O3 8 1 8 {} {0.436559497843 0.618230316904 0.326034478053} O4 9 1 14 {} {0.233296500792 0.532680760933 0.558103945846} Si3 10 1 7 {} {0.213712397024 0.454564659424 0.59225937378} N1 11 1 14 {} {0.191234927875 0.446220844039 0.699746023025} Si4 12 1 14 {} {0.214144277508 0.386818566006 0.51714690358} Si5 13 1 7 {} {0.208048264237 0.407892308571 0.406677004335} N2 14 1 7 {} {0.140789499183 0.485227937747 0.720004385995} N3 15 1 1 {} {0.351947026385 0.520445184983 0.36088501582} H1 16 1 1 {} {0.346396989199 0.604592755947 0.396095186307} H2 17 1 1 {} {0.381739528873 0.60473201625 0.590389307042} H3 18 1 1 {} {0.348780257489 0.405886491961 0.509259275756} H4 19 1 1 {} {0.341697763002 0.430608627137 0.62227554854} H5 20 1 1 {} {0.393743516092 0.443261300477 0.568672965138} H6 21 1 1 {} {0.490561768236 0.495809997377 0.391475132398} H7 22 1 1 {} {0.444936452425 0.46192436679 0.331376624699} H8 23 1 1 {} {0.448144571698 0.450913859398 0.449017023402} H9 24 1 1 {} {0.467426514714 0.615573061944 0.513901666399} H10 25 1 1 {} {0.468537202785 0.618988797103 0.31407215826} H11 26 1 1 {} {0.231554225775 0.576907231108 0.638490297385} H12 27 1 1 {} {0.204261003878 0.560763613225 0.48652595492} H13 28 1 1 {} {0.184526750465 0.373124357945 0.714041025247} H14 29 1 1 {} {0.222796397634 0.475372167871 0.765818387833} H15 30 1 1 {} {0.257395332388 0.350130147284 0.523024364391} H16 31 1 1 {} {0.176492177871 0.342324641184 0.543883839265} H17 32 1 1 {} {0.235093412546 0.422673266449 0.37077571871} H18 33 1 1 {} {0.180108393857 0.431446065801 0.38467774568} H19 34 1 1 {} {0.140002162584 0.534862078742 0.734906112172} H20 35 1 1 {} {0.112757724221 0.4713891913 0.686606589226} H21 36 1 6 {} {0.629086490343 0.6363588259 0.349690761418} C4 37 1 14 {} {0.585943028727 0.574010919342 0.387118433784} Si6 38 1 14 {} {0.623344385114 0.724865269763 0.386228491026} Si7 39 1 8 {} {0.536100159208 0.611108887001 0.381692603473} O5 40 1 8 {} {0.586265779914 0.509621068159 0.320095743988} O6 41 1 6 {} {0.596658978608 0.542027964864 0.502082737522} C5 42 1 6 {} {0.641379991896 0.741811464247 0.503467441351} C6 43 1 8 {} {0.568461593514 0.739718383714 0.374876383653} O7 44 1 8 {} {0.651008163064 0.774251228053 0.316302120706} O8 45 1 14 {} {0.580093637227 0.448989032145 0.247183921522} Si8 46 1 7 {} {0.592669312937 0.370925586472 0.290276468538} N4 47 1 14 {} {0.54908370397 0.314527738498 0.31354745466} Si9 48 1 14 {} {0.647254311577 0.345610443899 0.315424685296} Si10 49 1 7 {} {0.688228599756 0.391881616093 0.264186109608} N5 50 1 7 {} {0.525222428881 0.271502986745 0.226511195779} N6 51 1 1 {} {0.662527423114 0.618086938413 0.368220853114} H22 52 1 1 {} {0.628130810866 0.637125664814 0.276052768477} H23 53 1 1 {} {0.539153974401 0.660152696213 0.377342097119} H24 54 1 1 {} {0.628731371718 0.515350586606 0.505174978779} H25 55 1 1 {} {0.570458150122 0.506600261031 0.522275149831} H26 56 1 1 {} {0.597511570463 0.582605524564 0.551617135683} H27 57 1 1 {} {0.636118171875 0.794580691297 0.521670608066} H28 58 1 1 {} {0.676958583841 0.730357321945 0.512899677475} H29 59 1 1 {} {0.622348566623 0.711245631989 0.551147619242} H30 60 1 1 {} {0.557791650858 0.785426828496 0.371849037363} H31 61 1 1 {} {0.668898815576 0.809934593745 0.341300184355} H32 62 1 1 {} {0.532501007847 0.44688352436 0.218332442471} H33 63 1 1 {} {0.609346660417 0.465064284648 0.169787719097} H34 64 1 1 {} {0.568987245524 0.263775950562 0.374726551579} H35 65 1 1 {} {0.51224793672 0.352389982297 0.356795606797} H36 66 1 1 {} {0.656537331608 0.351720766836 0.41289737708} H37 67 1 1 {} {0.651119979334 0.274218447635 0.287272048436} H38 68 1 1 {} {0.701658866048 0.432522160425 0.294500902785} H39 69 1 1 {} {0.691206624658 0.394764819765 0.196782035556} H40 70 1 1 {} {0.502855711255 0.294557468757 0.185740365994} H41 71 1 1 {} {0.542601071747 0.23591989352 0.192599462106} H42 72 1 @end @Columns Cell Constraints string {a b c A B G} Origin int {{0 0 0}} Parameters double {{10.0 10.0 10.0 90.0 90.0 90.0}} PrimitiveData double {{{1.0 0.0 0.0} {0.0 1.0 0.0} {0.0 0.0 1.0}}} RotationMatrix double {{{1.0 0.0 0.0} {0.0 1.0 0.0} {0.0 0.0 1.0}}} SpaceGroup string P1 SpaceGroupNumber int 1 ToCartesians double {{{10.0 0.0 0.0} {0.0 10.0 0.0} {0.0 0.0 10.0}}} ToFractionals double {{{0.10000000000000001 0.0 0.0} {0.0 0.10000000000000001 0.0} {0.0 0.0 0.10000000000000001}}} @end @data {a b c A B G} {0 0 0} {30 20 15 90 90 90} {{1 0 0} {0 1 0} {0 0 1}} {{1 0 0} {0 1 0} {0 0 1}} P1 1 {{30 0 0} {0 20 0} {0 0 15}} {{0.0333333333333 0 0} {0 0.05 0} {0 0 0.0666666666667}} @end @Columns AsymmetricBond Atom1 reference AsymmetricAtom Atom2 reference AsymmetricAtom Key int 0 Order int 0 @end @data 56 41 0 0 50 47 0 0 2 0 0 0 58 42 0 0 44 38 0 0 70 50 0 0 69 49 0 0 34 14 0 0 48 46 0 0 52 36 0 0 6 2 0 0 49 48 0 0 62 45 0 0 21 6 0 0 7 2 0 0 22 6 0 0 8 2 0 0 27 9 0 0 33 13 0 0 37 36 0 0 23 6 0 0 59 42 0 0 12 10 0 0 54 41 0 0 51 36 0 0 61 44 0 0 16 0 0 0 20 5 0 0 19 5 0 0 13 12 0 0 1 0 0 0 43 38 0 0 10 9 0 0 68 49 0 0 53 39 0 0 3 1 0 0 47 46 0 0 60 43 0 0 4 1 0 0 18 5 0 0 5 1 0 0 67 48 0 0 26 9 0 0 32 13 0 0 46 45 0 0 17 3 0 0 11 10 0 0 9 4 0 0 15 0 0 0 25 8 0 0 31 12 0 0 42 38 0 0 64 47 0 0 24 7 0 0 29 11 0 0 40 37 0 0 39 37 0 0 41 37 0 0 66 48 0 0 57 42 0 0 38 36 0 0 65 47 0 0 30 12 0 0 28 11 0 0 71 50 0 0 45 40 0 0 35 14 0 0 55 41 0 0 14 11 0 0 63 45 0 0 @end @Columns Bond AsymmetricBond reference AsymmetricBond Atom1 reference Atom Atom2 reference Atom CellOffset2 int {{0 0 0}} Key int 0 @end @data 0 56 41 {0 0 0} 0 1 47 50 {0 0 0} 0 2 0 2 {0 0 0} 0 3 58 42 {0 0 0} 0 4 38 44 {0 0 0} 0 5 50 70 {0 0 0} 0 6 49 69 {0 0 0} 0 7 14 34 {0 0 0} 0 8 46 48 {0 0 0} 0 9 36 52 {0 0 0} 0 10 2 6 {0 0 0} 0 11 48 49 {0 0 0} 0 12 45 62 {0 0 0} 0 13 21 6 {0 0 0} 0 14 7 2 {0 0 0} 0 15 22 6 {0 0 0} 0 16 8 2 {0 0 0} 0 17 9 27 {0 0 0} 0 18 13 33 {0 0 0} 0 19 36 37 {0 0 0} 0 20 23 6 {0 0 0} 0 21 59 42 {0 0 0} 0 22 10 12 {0 0 0} 0 23 41 54 {0 0 0} 0 24 51 36 {0 0 0} 0 25 44 61 {0 0 0} 0 26 0 16 {0 0 0} 0 27 5 20 {0 0 0} 0 28 5 19 {0 0 0} 0 29 12 13 {0 0 0} 0 30 0 1 {0 0 0} 0 31 38 43 {0 0 0} 0 32 10 9 {0 0 0} 0 33 49 68 {0 0 0} 0 34 39 53 {0 0 0} 0 35 3 1 {0 0 0} 0 36 46 47 {0 0 0} 0 37 43 60 {0 0 0} 0 38 4 1 {0 0 0} 0 39 18 5 {0 0 0} 0 40 1 5 {0 0 0} 0 41 48 67 {0 0 0} 0 42 9 26 {0 0 0} 0 43 13 32 {0 0 0} 0 44 45 46 {0 0 0} 0 45 3 17 {0 0 0} 0 46 10 11 {0 0 0} 0 47 4 9 {0 0 0} 0 48 15 0 {0 0 0} 0 49 8 25 {0 0 0} 0 50 12 31 {0 0 0} 0 51 38 42 {0 0 0} 0 52 64 47 {0 0 0} 0 53 7 24 {0 0 0} 0 54 11 29 {0 0 0} 0 55 40 37 {0 0 0} 0 56 39 37 {0 0 0} 0 57 37 41 {0 0 0} 0 58 66 48 {0 0 0} 0 59 42 57 {0 0 0} 0 60 38 36 {0 0 0} 0 61 65 47 {0 0 0} 0 62 30 12 {0 0 0} 0 63 28 11 {0 0 0} 0 64 50 71 {0 0 0} 0 65 45 40 {0 0 0} 0 66 14 35 {0 0 0} 0 67 55 41 {0 0 0} 0 68 11 14 {0 0 0} 0 69 63 45 {0 0 0} 0 @end @Columns Subset Color string {{#65d9f0}} Criteria string {{}} DisplayLine int 0 IeqJ int 1 IgtJ int 0 IltJ int 0 Length int 1 Name string {{}} Table string {{}} Type string atom UseColor int 0 @end @data @end