iterations/neb0_image03_iter2.sci output for 43: 3.6A-->1.6A 715(amd-3) Si-CH2H...H2HC-Si two dimer closed (TSS)
Status: finished#MD System 2.0 @Title neb0_image03 @Columns AsymmetricAtom AtomicNumber int 0 Connections string {{}} Fractional double {{0.0 0.0 0.0}} Name string {{}} Site int 1 WyckoffPosition int -1 @end @data 6 {} {0.352947751484 0.550268372628 0.422156896603} C1 1 1 14 {} {0.333909751505 0.517264837444 0.533213781568} Si1 2 1 14 {} {0.408188606745 0.59238600908 0.417972426327} Si2 3 1 8 {} {0.337150357466 0.577538014337 0.608479124469} O1 4 1 8 {} {0.28099091204 0.495277747358 0.525277637568} O2 5 1 6 {} {0.365545038363 0.441300159604 0.568607968668} C2 6 1 6 {} {0.457259810644 0.534785807146 0.411696826909} C3 7 1 8 {} {0.409786935221 0.636806669807 0.513068049782} O3 8 1 8 {} {0.408509548758 0.643274239489 0.330185498934} O4 9 1 14 {} {0.228660168431 0.50089057894 0.555886973818} Si3 10 1 7 {} {0.209010286021 0.422170299854 0.587319281473} N1 11 1 14 {} {0.172973744406 0.417815796997 0.679162384271} Si4 12 1 14 {} {0.224614775821 0.352159317044 0.523383498954} Si5 13 1 7 {} {0.225833457782 0.364525228272 0.409767183768} N2 14 1 7 {} {0.125467329788 0.466150578852 0.671982903079} N3 15 1 1 {} {0.352499202648 0.50983549755 0.372123792517} H1 16 1 1 {} {0.328015098417 0.58744046024 0.40015860679} H2 17 1 1 {} {0.360937193117 0.609670532361 0.595422768694} H3 18 1 1 {} {0.36222414716 0.400302138268 0.520109641419} H4 19 1 1 {} {0.352870327028 0.423243353044 0.633111572225} H5 20 1 1 {} {0.401257022487 0.452277411747 0.576901088106} H6 21 1 1 {} {0.48904025 0.562434021489 0.410921973165} H7 22 1 1 {} {0.455833737936 0.504195177735 0.350724836772} H8 23 1 1 {} {0.458224203855 0.500624100009 0.469127195446} H9 24 1 1 {} {0.435044240917 0.666111765881 0.523355216734} H10 25 1 1 {} {0.436851692652 0.652083302154 0.301414468763} H11 26 1 1 {} {0.222871578638 0.546535415696 0.633900934083} H12 27 1 1 {} {0.203135221704 0.527434185739 0.478189541748} H13 28 1 1 {} {0.160082169503 0.346119375538 0.687296909772} H14 29 1 1 {} {0.196009557187 0.44215398051 0.761064707511} H15 30 1 1 {} {0.270540565808 0.330469799398 0.548293047295} H16 31 1 1 {} {0.191480724695 0.298740704432 0.543658183147} H17 32 1 1 {} {0.252266516244 0.388526457443 0.381827758095} H18 33 1 1 {} {0.197358211258 0.375190458247 0.375760578236} H19 34 1 1 {} {0.125269374784 0.513736280468 0.695764249609} H20 35 1 1 {} {0.102793815044 0.460215185162 0.622218797284} H21 36 1 6 {} {0.589014163988 0.332390498686 0.309708197484} C4 37 1 14 {} {0.584237201149 0.365957666162 0.42668979429} Si6 38 1 14 {} {0.573063071511 0.243303341374 0.291797420561} Si7 39 1 8 {} {0.612864074337 0.31688667129 0.494715262213} O5 40 1 8 {} {0.606885825506 0.440996900769 0.431714189894} O6 41 1 6 {} {0.524981727994 0.374658621146 0.463321984392} C5 42 1 6 {} {0.512160978188 0.232699729284 0.268159132518} C6 43 1 8 {} {0.588344359913 0.204672833803 0.386070649279} O7 44 1 8 {} {0.602780688529 0.206307720668 0.211910463095} O8 45 1 14 {} {0.650615361885 0.48584277226 0.460367681593} Si8 46 1 7 {} {0.635119458176 0.566924948293 0.487433803004} N4 47 1 14 {} {0.641373947565 0.594474693995 0.59774799811} Si9 48 1 14 {} {0.61123364119 0.620579340615 0.407972943723} Si10 49 1 7 {} {0.622225927408 0.601535087744 0.298377488162} N5 50 1 7 {} {0.694389659974 0.614285810899 0.633901274744} N6 51 1 1 {} {0.569598568602 0.364158644298 0.263765259369} H22 52 1 1 {} {0.624341429823 0.337536244612 0.290118258155} H23 53 1 1 {} {0.611312769105 0.269746602613 0.477232068263} H24 54 1 1 {} {0.505866788746 0.407634227549 0.418766643566} H25 55 1 1 {} {0.523767148179 0.396139105697 0.530840062382} H26 56 1 1 {} {0.508194927823 0.325750186903 0.465705259951} H27 57 1 1 {} {0.50282420191 0.179596463138 0.263502434028} H28 58 1 1 {} {0.50293047842 0.256882343744 0.204782891228} H29 59 1 1 {} {0.491738498398 0.255628576939 0.320886089795} H30 60 1 1 {} {0.591001525612 0.156326163193 0.383823800984} H31 61 1 1 {} {0.589571927034 0.20229641 0.153189771412} H32 62 1 1 {} {0.672621122577 0.457029512624 0.54100971999} H33 63 1 1 {} {0.682347775673 0.485415285523 0.38372128471} H34 64 1 1 {} {0.61409583341 0.656731801355 0.604548028725} H35 65 1 1 {} {0.625241293971 0.541559045077 0.659775060733} H36 66 1 1 {} {0.56149961487 0.619664918619 0.416138096089} H37 67 1 1 {} {0.628164261886 0.689354858004 0.426661225589} H38 68 1 1 {} {0.605969506751 0.56278887395 0.268862656836} H39 69 1 1 {} {0.653907407106 0.604845791073 0.274568688501} H40 70 1 1 {} {0.715757441 0.577132406254 0.651956381065} H41 71 1 1 {} {0.711336033947 0.653438971485 0.60683804152} H42 72 1 @end @Columns Cell Constraints string {a b c A B G} Origin int {{0 0 0}} Parameters double {{10.0 10.0 10.0 90.0 90.0 90.0}} PrimitiveData double {{{1.0 0.0 0.0} {0.0 1.0 0.0} {0.0 0.0 1.0}}} RotationMatrix double {{{1.0 0.0 0.0} {0.0 1.0 0.0} {0.0 0.0 1.0}}} SpaceGroup string P1 SpaceGroupNumber int 1 ToCartesians double {{{10.0 0.0 0.0} {0.0 10.0 0.0} {0.0 0.0 10.0}}} ToFractionals double {{{0.10000000000000001 0.0 0.0} {0.0 0.10000000000000001 0.0} {0.0 0.0 0.10000000000000001}}} @end @data {a b c A B G} {0 0 0} {30 20 15 90 90 90} {{1 0 0} {0 1 0} {0 0 1}} {{1 0 0} {0 1 0} {0 0 1}} P1 1 {{30 0 0} {0 20 0} {0 0 15}} {{0.0333333333333 0 0} {0 0.05 0} {0 0 0.0666666666667}} @end @Columns AsymmetricBond Atom1 reference AsymmetricAtom Atom2 reference AsymmetricAtom Key int 0 Order int 0 @end @data 56 41 0 0 50 47 0 0 2 0 0 0 58 42 0 0 44 38 0 0 70 50 0 0 69 49 0 0 34 14 0 0 48 46 0 0 52 36 0 0 6 2 0 0 49 48 0 0 62 45 0 0 21 6 0 0 7 2 0 0 22 6 0 0 8 2 0 0 27 9 0 0 33 13 0 0 37 36 0 0 23 6 0 0 59 42 0 0 12 10 0 0 54 41 0 0 51 36 0 0 61 44 0 0 16 0 0 0 19 5 0 0 20 5 0 0 13 12 0 0 1 0 0 0 43 38 0 0 10 9 0 0 68 49 0 0 53 39 0 0 3 1 0 0 47 46 0 0 60 43 0 0 4 1 0 0 18 5 0 0 5 1 0 0 67 48 0 0 26 9 0 0 32 13 0 0 46 45 0 0 17 3 0 0 11 10 0 0 9 4 0 0 15 0 0 0 25 8 0 0 31 12 0 0 42 38 0 0 64 47 0 0 24 7 0 0 29 11 0 0 40 37 0 0 39 37 0 0 41 37 0 0 66 48 0 0 57 42 0 0 38 36 0 0 65 47 0 0 30 12 0 0 28 11 0 0 71 50 0 0 45 40 0 0 35 14 0 0 55 41 0 0 14 11 0 0 63 45 0 0 @end @Columns Bond AsymmetricBond reference AsymmetricBond Atom1 reference Atom Atom2 reference Atom CellOffset2 int {{0 0 0}} Key int 0 @end @data 0 56 41 {0 0 0} 0 1 47 50 {0 0 0} 0 2 0 2 {0 0 0} 0 3 58 42 {0 0 0} 0 4 38 44 {0 0 0} 0 5 50 70 {0 0 0} 0 6 49 69 {0 0 0} 0 7 14 34 {0 0 0} 0 8 46 48 {0 0 0} 0 9 36 52 {0 0 0} 0 10 2 6 {0 0 0} 0 11 48 49 {0 0 0} 0 12 45 62 {0 0 0} 0 13 21 6 {0 0 0} 0 14 7 2 {0 0 0} 0 15 22 6 {0 0 0} 0 16 8 2 {0 0 0} 0 17 9 27 {0 0 0} 0 18 13 33 {0 0 0} 0 19 36 37 {0 0 0} 0 20 23 6 {0 0 0} 0 21 59 42 {0 0 0} 0 22 10 12 {0 0 0} 0 23 41 54 {0 0 0} 0 24 51 36 {0 0 0} 0 25 44 61 {0 0 0} 0 26 0 16 {0 0 0} 0 27 5 19 {0 0 0} 0 28 5 20 {0 0 0} 0 29 12 13 {0 0 0} 0 30 0 1 {0 0 0} 0 31 38 43 {0 0 0} 0 32 10 9 {0 0 0} 0 33 49 68 {0 0 0} 0 34 39 53 {0 0 0} 0 35 3 1 {0 0 0} 0 36 46 47 {0 0 0} 0 37 43 60 {0 0 0} 0 38 4 1 {0 0 0} 0 39 18 5 {0 0 0} 0 40 1 5 {0 0 0} 0 41 48 67 {0 0 0} 0 42 9 26 {0 0 0} 0 43 13 32 {0 0 0} 0 44 45 46 {0 0 0} 0 45 3 17 {0 0 0} 0 46 10 11 {0 0 0} 0 47 4 9 {0 0 0} 0 48 15 0 {0 0 0} 0 49 8 25 {0 0 0} 0 50 12 31 {0 0 0} 0 51 38 42 {0 0 0} 0 52 64 47 {0 0 0} 0 53 7 24 {0 0 0} 0 54 11 29 {0 0 0} 0 55 40 37 {0 0 0} 0 56 39 37 {0 0 0} 0 57 37 41 {0 0 0} 0 58 66 48 {0 0 0} 0 59 42 57 {0 0 0} 0 60 38 36 {0 0 0} 0 61 65 47 {0 0 0} 0 62 30 12 {0 0 0} 0 63 28 11 {0 0 0} 0 64 50 71 {0 0 0} 0 65 45 40 {0 0 0} 0 66 14 35 {0 0 0} 0 67 55 41 {0 0 0} 0 68 11 14 {0 0 0} 0 69 63 45 {0 0 0} 0 @end @Columns Subset Color string {{#65d9f0}} Criteria string {{}} DisplayLine int 0 IeqJ int 1 IgtJ int 0 IltJ int 0 Length int 1 Name string {{}} Table string {{}} Type string atom UseColor int 0 @end @data @end