iterations/neb0_image03_iter3.sci output for 43: 3.6A-->1.6A 715(amd-3) Si-CH2H...H2HC-Si two dimer closed (TSS)
Status: finished#MD System 2.0 @Title neb0_image03 @Columns AsymmetricAtom AtomicNumber int 0 Connections string {{}} Fractional double {{0.0 0.0 0.0}} Name string {{}} Site int 1 WyckoffPosition int -1 @end @data 6 {} {0.352960816937 0.550271169024 0.422144700441} C1 1 1 14 {} {0.333875019322 0.51723659984 0.533229895807} Si1 2 1 14 {} {0.408175138227 0.592411139216 0.417979466728} Si2 3 1 8 {} {0.337159962869 0.577540444173 0.608480232019} O1 4 1 8 {} {0.281023991713 0.495298775142 0.525265482522} O2 5 1 6 {} {0.365553479349 0.441294695196 0.568618274985} C2 6 1 6 {} {0.457255958163 0.534805799362 0.411707797395} C3 7 1 8 {} {0.409799173985 0.636789072581 0.513061448306} O3 8 1 8 {} {0.40850991108 0.643292441458 0.330184444633} O4 9 1 14 {} {0.228646905486 0.500856668514 0.555914540214} Si3 10 1 7 {} {0.209018229164 0.422166009324 0.58732145718} N1 11 1 14 {} {0.17297349346 0.417842825968 0.679115976115} Si4 12 1 14 {} {0.224602590977 0.352179156752 0.523356542717} Si5 13 1 7 {} {0.225835834774 0.364538030555 0.409770043782} N2 14 1 7 {} {0.125467233219 0.466161568866 0.672001355068} N3 15 1 1 {} {0.352500861289 0.509830500609 0.372126400808} H1 16 1 1 {} {0.328017035998 0.587426465649 0.400162448558} H2 17 1 1 {} {0.360937014098 0.609669754543 0.595425346499} H3 18 1 1 {} {0.362223460198 0.400296697211 0.520112897177} H4 19 1 1 {} {0.352872142106 0.423238119182 0.633112800584} H5 20 1 1 {} {0.401258792618 0.452270601143 0.57690180238} H6 21 1 1 {} {0.489040140402 0.562434828571 0.410930671402} H7 22 1 1 {} {0.45583015705 0.504196018237 0.350724639576} H8 23 1 1 {} {0.458217429178 0.500639157692 0.469120425235} H9 24 1 1 {} {0.435039721461 0.666112274546 0.523356492442} H10 25 1 1 {} {0.436852753744 0.652084106921 0.301412437582} H11 26 1 1 {} {0.222877499649 0.546536914121 0.633895902754} H12 27 1 1 {} {0.203140224885 0.527438765955 0.478179179016} H13 28 1 1 {} {0.160086749555 0.346109929839 0.687304860067} H14 29 1 1 {} {0.196013383383 0.442155687356 0.761071807372} H15 30 1 1 {} {0.27054203566 0.330462961279 0.54828624412} H16 31 1 1 {} {0.191482179454 0.298736029013 0.543663203226} H17 32 1 1 {} {0.252266416855 0.388523679042 0.381829685407} H18 33 1 1 {} {0.197359750969 0.375190590116 0.375767865279} H19 34 1 1 {} {0.125274770502 0.513738084207 0.695763266902} H20 35 1 1 {} {0.102797682995 0.460207950217 0.622220313193} H21 36 1 6 {} {0.589017979442 0.332405209711 0.309719533616} C4 37 1 14 {} {0.584219602538 0.365895937739 0.426712707878} Si6 38 1 14 {} {0.573061135274 0.243294248722 0.29176281394} Si7 39 1 8 {} {0.612871975047 0.316893128805 0.494713078275} O5 40 1 8 {} {0.606892253404 0.441045661567 0.431696568725} O6 41 1 6 {} {0.524988061636 0.374647799461 0.463302910081} C5 42 1 6 {} {0.512164632709 0.232708823013 0.268162477242} C6 43 1 8 {} {0.588325527196 0.204680296498 0.386067387067} O7 44 1 8 {} {0.602767527286 0.206308771704 0.211921077834} O8 45 1 14 {} {0.650632846864 0.485800420259 0.460443439957} Si8 46 1 7 {} {0.635050389445 0.566919781369 0.487078754271} N4 47 1 14 {} {0.641588132157 0.594596112447 0.59795582813} Si9 48 1 14 {} {0.611177535952 0.620585645521 0.40852522275} Si10 49 1 7 {} {0.62227188472 0.601466250778 0.29825463503} N5 50 1 7 {} {0.694299276962 0.614255989379 0.633908319866} N6 51 1 1 {} {0.569596459795 0.364161089554 0.263757937858} H22 52 1 1 {} {0.624340210238 0.337537034885 0.290117663068} H23 53 1 1 {} {0.611312253188 0.269754598192 0.477228273894} H24 54 1 1 {} {0.505881763266 0.407609442345 0.418777100523} H25 55 1 1 {} {0.523764354506 0.396139057695 0.530837990271} H26 56 1 1 {} {0.50819668709 0.325748302037 0.465700835834} H27 57 1 1 {} {0.50282747925 0.179593499981 0.263508557646} H28 58 1 1 {} {0.502927083248 0.256876441924 0.20479293419} H29 59 1 1 {} {0.491740129418 0.255620627213 0.320891444458} H30 60 1 1 {} {0.591009060452 0.156330624748 0.383820560715} H31 61 1 1 {} {0.589570972868 0.202299998524 0.15318119609} H32 62 1 1 {} {0.672618399574 0.457038742042 0.540989855447} H33 63 1 1 {} {0.682339099213 0.485427595266 0.383708576606} H34 64 1 1 {} {0.614071546614 0.656725675863 0.604514668397} H35 65 1 1 {} {0.625221497752 0.541543595452 0.659723562259} H36 66 1 1 {} {0.56150806117 0.619679978508 0.416093408727} H37 67 1 1 {} {0.628167826718 0.689355278137 0.426586575537} H38 68 1 1 {} {0.605939935651 0.56277183444 0.268799495698} H39 69 1 1 {} {0.65392851829 0.604852702937 0.274523034995} H40 70 1 1 {} {0.715735243013 0.577171699913 0.651925010001} H41 71 1 1 {} {0.711318680611 0.653400923285 0.606862518487} H42 72 1 @end @Columns Cell Constraints string {a b c A B G} Origin int {{0 0 0}} Parameters double {{10.0 10.0 10.0 90.0 90.0 90.0}} PrimitiveData double {{{1.0 0.0 0.0} {0.0 1.0 0.0} {0.0 0.0 1.0}}} RotationMatrix double {{{1.0 0.0 0.0} {0.0 1.0 0.0} {0.0 0.0 1.0}}} SpaceGroup string P1 SpaceGroupNumber int 1 ToCartesians double {{{10.0 0.0 0.0} {0.0 10.0 0.0} {0.0 0.0 10.0}}} ToFractionals double {{{0.10000000000000001 0.0 0.0} {0.0 0.10000000000000001 0.0} {0.0 0.0 0.10000000000000001}}} @end @data {a b c A B G} {0 0 0} {30 20 15 90 90 90} {{1 0 0} {0 1 0} {0 0 1}} {{1 0 0} {0 1 0} {0 0 1}} P1 1 {{30 0 0} {0 20 0} {0 0 15}} {{0.0333333333333 0 0} {0 0.05 0} {0 0 0.0666666666667}} @end @Columns AsymmetricBond Atom1 reference AsymmetricAtom Atom2 reference AsymmetricAtom Key int 0 Order int 0 @end @data 56 41 0 0 50 47 0 0 2 0 0 0 58 42 0 0 44 38 0 0 70 50 0 0 69 49 0 0 34 14 0 0 48 46 0 0 52 36 0 0 6 2 0 0 49 48 0 0 62 45 0 0 21 6 0 0 7 2 0 0 22 6 0 0 8 2 0 0 27 9 0 0 33 13 0 0 37 36 0 0 23 6 0 0 59 42 0 0 12 10 0 0 54 41 0 0 51 36 0 0 61 44 0 0 16 0 0 0 19 5 0 0 20 5 0 0 13 12 0 0 1 0 0 0 43 38 0 0 10 9 0 0 68 49 0 0 53 39 0 0 3 1 0 0 47 46 0 0 60 43 0 0 4 1 0 0 18 5 0 0 5 1 0 0 67 48 0 0 26 9 0 0 32 13 0 0 46 45 0 0 17 3 0 0 11 10 0 0 9 4 0 0 15 0 0 0 25 8 0 0 31 12 0 0 42 38 0 0 64 47 0 0 24 7 0 0 29 11 0 0 40 37 0 0 39 37 0 0 41 37 0 0 66 48 0 0 57 42 0 0 38 36 0 0 65 47 0 0 30 12 0 0 28 11 0 0 71 50 0 0 45 40 0 0 35 14 0 0 55 41 0 0 14 11 0 0 63 45 0 0 @end @Columns Bond AsymmetricBond reference AsymmetricBond Atom1 reference Atom Atom2 reference Atom CellOffset2 int {{0 0 0}} Key int 0 @end @data 0 56 41 {0 0 0} 0 1 47 50 {0 0 0} 0 2 0 2 {0 0 0} 0 3 58 42 {0 0 0} 0 4 38 44 {0 0 0} 0 5 50 70 {0 0 0} 0 6 49 69 {0 0 0} 0 7 14 34 {0 0 0} 0 8 46 48 {0 0 0} 0 9 36 52 {0 0 0} 0 10 2 6 {0 0 0} 0 11 48 49 {0 0 0} 0 12 45 62 {0 0 0} 0 13 21 6 {0 0 0} 0 14 7 2 {0 0 0} 0 15 22 6 {0 0 0} 0 16 8 2 {0 0 0} 0 17 9 27 {0 0 0} 0 18 13 33 {0 0 0} 0 19 36 37 {0 0 0} 0 20 23 6 {0 0 0} 0 21 59 42 {0 0 0} 0 22 10 12 {0 0 0} 0 23 41 54 {0 0 0} 0 24 51 36 {0 0 0} 0 25 44 61 {0 0 0} 0 26 0 16 {0 0 0} 0 27 5 19 {0 0 0} 0 28 5 20 {0 0 0} 0 29 12 13 {0 0 0} 0 30 0 1 {0 0 0} 0 31 38 43 {0 0 0} 0 32 10 9 {0 0 0} 0 33 49 68 {0 0 0} 0 34 39 53 {0 0 0} 0 35 3 1 {0 0 0} 0 36 46 47 {0 0 0} 0 37 43 60 {0 0 0} 0 38 4 1 {0 0 0} 0 39 18 5 {0 0 0} 0 40 1 5 {0 0 0} 0 41 48 67 {0 0 0} 0 42 9 26 {0 0 0} 0 43 13 32 {0 0 0} 0 44 45 46 {0 0 0} 0 45 3 17 {0 0 0} 0 46 10 11 {0 0 0} 0 47 4 9 {0 0 0} 0 48 15 0 {0 0 0} 0 49 8 25 {0 0 0} 0 50 12 31 {0 0 0} 0 51 38 42 {0 0 0} 0 52 64 47 {0 0 0} 0 53 7 24 {0 0 0} 0 54 11 29 {0 0 0} 0 55 40 37 {0 0 0} 0 56 39 37 {0 0 0} 0 57 37 41 {0 0 0} 0 58 66 48 {0 0 0} 0 59 42 57 {0 0 0} 0 60 38 36 {0 0 0} 0 61 65 47 {0 0 0} 0 62 30 12 {0 0 0} 0 63 28 11 {0 0 0} 0 64 50 71 {0 0 0} 0 65 45 40 {0 0 0} 0 66 14 35 {0 0 0} 0 67 55 41 {0 0 0} 0 68 11 14 {0 0 0} 0 69 63 45 {0 0 0} 0 @end @Columns Subset Color string {{#65d9f0}} Criteria string {{}} DisplayLine int 0 IeqJ int 1 IgtJ int 0 IltJ int 0 Length int 1 Name string {{}} Table string {{}} Type string atom UseColor int 0 @end @data @end