iterations/neb0_image04_iter12.sci output for 43: 3.6A-->1.6A 715(amd-3) Si-CH2H...H2HC-Si two dimer closed (TSS)
Status: finished#MD System 2.0 @Title neb0_image04 @Columns AsymmetricAtom AtomicNumber int 0 Connections string {{}} Fractional double {{0.0 0.0 0.0}} Name string {{}} Site int 1 WyckoffPosition int -1 @end @data 6 {} {0.3548086426 0.545416452549 0.422466217031} C1 1 1 14 {} {0.335709962563 0.512378423469 0.533457258844} Si1 2 1 14 {} {0.409956655079 0.587711186338 0.41821462875} Si2 3 1 8 {} {0.339045739064 0.572634731135 0.60873125503} O1 4 1 8 {} {0.282839078411 0.490341007293 0.525520136787} O2 5 1 6 {} {0.367401521034 0.436455935209 0.568892625751} C2 6 1 6 {} {0.45896434796 0.530258179684 0.41188284382} C3 7 1 8 {} {0.41165172803 0.631945376615 0.513381899466} O3 8 1 8 {} {0.410333000154 0.638599106222 0.330437367208} O4 9 1 14 {} {0.230483814735 0.495978883832 0.55614233402} Si3 10 1 7 {} {0.210864156006 0.41727933955 0.587589931209} N1 11 1 14 {} {0.174836647581 0.412999944117 0.679460633699} Si4 12 1 14 {} {0.226445726802 0.347255697646 0.523592635939} Si5 13 1 7 {} {0.227686027638 0.359582470131 0.409982168082} N2 14 1 7 {} {0.12730393674 0.461292364345 0.67232102889} N3 15 1 1 {} {0.354358565512 0.505002347464 0.372413138015} H1 16 1 1 {} {0.329872484279 0.582546046454 0.40043558002} H2 17 1 1 {} {0.362788260752 0.604824092192 0.595683282752} H3 18 1 1 {} {0.364067534464 0.395448433268 0.520411108699} H4 19 1 1 {} {0.354727697562 0.418381760193 0.633393876793} H5 20 1 1 {} {0.403120386962 0.447428910594 0.577167338164} H6 21 1 1 {} {0.490827626084 0.557655587674 0.411259661767} H7 22 1 1 {} {0.457579802329 0.499505235465 0.35106502867} H8 23 1 1 {} {0.459901640328 0.496159336202 0.469310895754} H9 24 1 1 {} {0.436877782893 0.661306912365 0.523599140395} H10 25 1 1 {} {0.438699043396 0.647269466062 0.301722228643} H11 26 1 1 {} {0.224743133791 0.541685300808 0.634111065399} H12 27 1 1 {} {0.205010136026 0.522607162443 0.478424722444} H13 28 1 1 {} {0.161967606058 0.341290602572 0.687603504941} H14 29 1 1 {} {0.197882352245 0.437355005201 0.761341760228} H15 30 1 1 {} {0.272375727827 0.325627059327 0.548519964477} H16 31 1 1 {} {0.193319346693 0.293891500831 0.54394767539} H17 32 1 1 {} {0.254102952958 0.383672286321 0.382110613635} H18 33 1 1 {} {0.199204815454 0.370363817507 0.376044013604} H19 34 1 1 {} {0.1271402605 0.508905788191 0.696015032574} H20 35 1 1 {} {0.104650961959 0.455360487502 0.622493844341} H21 36 1 6 {} {0.587181657618 0.337284944633 0.309428409365} C4 37 1 14 {} {0.582440337738 0.370685349936 0.426469316324} Si6 38 1 14 {} {0.571219313593 0.248218798386 0.291555369621} Si7 39 1 8 {} {0.61110377782 0.321719692032 0.494476434791} O5 40 1 8 {} {0.605014466062 0.445822331588 0.431393771694} O6 41 1 6 {} {0.523290687311 0.379183585526 0.463129251042} C5 42 1 6 {} {0.510333979935 0.237564251113 0.267931217069} C6 43 1 8 {} {0.58648798017 0.209513153601 0.385777304978} O7 44 1 8 {} {0.600899771369 0.21126679221 0.211629437227} O8 45 1 14 {} {0.648746510348 0.49062231272 0.460073982404} Si8 46 1 7 {} {0.633214093303 0.571680163616 0.487133477003} N4 47 1 14 {} {0.639777844305 0.599451500132 0.597545673898} Si9 48 1 14 {} {0.609305701683 0.62540973692 0.408311962281} Si10 49 1 7 {} {0.620465816248 0.606100533778 0.29834764755} N5 50 1 7 {} {0.692464800176 0.619232414545 0.633912410254} N6 51 1 1 {} {0.567747664199 0.369025229772 0.263464381928} H22 52 1 1 {} {0.622509055583 0.342397640337 0.289840582972} H23 53 1 1 {} {0.609479069402 0.27458737239 0.476942215557} H24 54 1 1 {} {0.504266386004 0.412034467017 0.41848842003} H25 55 1 1 {} {0.521935239639 0.400913023515 0.530458764486} H26 56 1 1 {} {0.506379453281 0.330419579922 0.465459936741} H27 57 1 1 {} {0.501005422472 0.18445177643 0.263279933113} H28 58 1 1 {} {0.501057574262 0.261696883626 0.204557874407} H29 59 1 1 {} {0.48990079109 0.260424426127 0.320677569449} H30 60 1 1 {} {0.589210081182 0.161167426965 0.383528075863} H31 61 1 1 {} {0.587717285138 0.20716862487 0.152880467614} H32 62 1 1 {} {0.67077821446 0.46191044912 0.540757412054} H33 63 1 1 {} {0.680460548439 0.490286421423 0.383428281383} H34 64 1 1 {} {0.612202235866 0.661494008164 0.604123179143} H35 65 1 1 {} {0.623362717192 0.546430748228 0.659159990572} H36 66 1 1 {} {0.559562323099 0.62462194278 0.415731789873} H37 67 1 1 {} {0.626325183879 0.694273819966 0.426137274662} H38 68 1 1 {} {0.604058437908 0.567678609416 0.268421102123} H39 69 1 1 {} {0.652031667688 0.609674332025 0.274207275175} H40 70 1 1 {} {0.713871315886 0.582008470926 0.651657594936} H41 71 1 1 {} {0.709475466413 0.658289284699 0.60662207786} H42 72 1 @end @Columns Cell Constraints string {a b c A B G} Origin int {{0 0 0}} Parameters double {{10.0 10.0 10.0 90.0 90.0 90.0}} PrimitiveData double {{{1.0 0.0 0.0} {0.0 1.0 0.0} {0.0 0.0 1.0}}} RotationMatrix double {{{1.0 0.0 0.0} {0.0 1.0 0.0} {0.0 0.0 1.0}}} SpaceGroup string P1 SpaceGroupNumber int 1 ToCartesians double {{{10.0 0.0 0.0} {0.0 10.0 0.0} {0.0 0.0 10.0}}} ToFractionals double {{{0.10000000000000001 0.0 0.0} {0.0 0.10000000000000001 0.0} {0.0 0.0 0.10000000000000001}}} @end @data {a b c A B G} {0 0 0} {30 20 15 90 90 90} {{1 0 0} {0 1 0} {0 0 1}} {{1 0 0} {0 1 0} {0 0 1}} P1 1 {{30 0 0} {0 20 0} {0 0 15}} {{0.0333333333333 0 0} {0 0.05 0} {0 0 0.0666666666667}} @end @Columns AsymmetricBond Atom1 reference AsymmetricAtom Atom2 reference AsymmetricAtom Key int 0 Order int 0 @end @data 56 41 0 0 50 47 0 0 2 0 0 0 58 42 0 0 44 38 0 0 70 50 0 0 69 49 0 0 34 14 0 0 48 46 0 0 52 36 0 0 6 2 0 0 49 48 0 0 62 45 0 0 21 6 0 0 7 2 0 0 22 6 0 0 8 2 0 0 27 9 0 0 33 13 0 0 37 36 0 0 23 6 0 0 59 42 0 0 12 10 0 0 54 41 0 0 51 36 0 0 61 44 0 0 16 0 0 0 19 5 0 0 20 5 0 0 13 12 0 0 1 0 0 0 43 38 0 0 10 9 0 0 68 49 0 0 53 39 0 0 3 1 0 0 47 46 0 0 60 43 0 0 4 1 0 0 18 5 0 0 5 1 0 0 67 48 0 0 26 9 0 0 32 13 0 0 46 45 0 0 17 3 0 0 11 10 0 0 9 4 0 0 15 0 0 0 25 8 0 0 31 12 0 0 42 38 0 0 64 47 0 0 24 7 0 0 29 11 0 0 40 37 0 0 39 37 0 0 41 37 0 0 66 48 0 0 57 42 0 0 38 36 0 0 65 47 0 0 30 12 0 0 28 11 0 0 71 50 0 0 45 40 0 0 35 14 0 0 55 41 0 0 14 11 0 0 63 45 0 0 @end @Columns Bond AsymmetricBond reference AsymmetricBond Atom1 reference Atom Atom2 reference Atom CellOffset2 int {{0 0 0}} Key int 0 @end @data 0 56 41 {0 0 0} 0 1 47 50 {0 0 0} 0 2 0 2 {0 0 0} 0 3 58 42 {0 0 0} 0 4 38 44 {0 0 0} 0 5 50 70 {0 0 0} 0 6 49 69 {0 0 0} 0 7 14 34 {0 0 0} 0 8 46 48 {0 0 0} 0 9 36 52 {0 0 0} 0 10 2 6 {0 0 0} 0 11 48 49 {0 0 0} 0 12 45 62 {0 0 0} 0 13 21 6 {0 0 0} 0 14 7 2 {0 0 0} 0 15 22 6 {0 0 0} 0 16 8 2 {0 0 0} 0 17 9 27 {0 0 0} 0 18 13 33 {0 0 0} 0 19 36 37 {0 0 0} 0 20 23 6 {0 0 0} 0 21 59 42 {0 0 0} 0 22 10 12 {0 0 0} 0 23 41 54 {0 0 0} 0 24 51 36 {0 0 0} 0 25 44 61 {0 0 0} 0 26 0 16 {0 0 0} 0 27 5 19 {0 0 0} 0 28 5 20 {0 0 0} 0 29 12 13 {0 0 0} 0 30 0 1 {0 0 0} 0 31 38 43 {0 0 0} 0 32 10 9 {0 0 0} 0 33 49 68 {0 0 0} 0 34 39 53 {0 0 0} 0 35 3 1 {0 0 0} 0 36 46 47 {0 0 0} 0 37 43 60 {0 0 0} 0 38 4 1 {0 0 0} 0 39 18 5 {0 0 0} 0 40 1 5 {0 0 0} 0 41 48 67 {0 0 0} 0 42 9 26 {0 0 0} 0 43 13 32 {0 0 0} 0 44 45 46 {0 0 0} 0 45 3 17 {0 0 0} 0 46 10 11 {0 0 0} 0 47 4 9 {0 0 0} 0 48 15 0 {0 0 0} 0 49 8 25 {0 0 0} 0 50 12 31 {0 0 0} 0 51 38 42 {0 0 0} 0 52 64 47 {0 0 0} 0 53 7 24 {0 0 0} 0 54 11 29 {0 0 0} 0 55 40 37 {0 0 0} 0 56 39 37 {0 0 0} 0 57 37 41 {0 0 0} 0 58 66 48 {0 0 0} 0 59 42 57 {0 0 0} 0 60 38 36 {0 0 0} 0 61 65 47 {0 0 0} 0 62 30 12 {0 0 0} 0 63 28 11 {0 0 0} 0 64 50 71 {0 0 0} 0 65 45 40 {0 0 0} 0 66 14 35 {0 0 0} 0 67 55 41 {0 0 0} 0 68 11 14 {0 0 0} 0 69 63 45 {0 0 0} 0 @end @Columns Subset Color string {{#65d9f0}} Criteria string {{}} DisplayLine int 0 IeqJ int 1 IgtJ int 0 IltJ int 0 Length int 1 Name string {{}} Table string {{}} Type string atom UseColor int 0 @end @data @end