iterations/neb0_image05_iter15.sci output for 43: 3.6A-->1.6A 715(amd-3) Si-CH2H...H2HC-Si two dimer closed (TSS)
Status: finished#MD System 2.0 @Title neb0_image05 @Columns AsymmetricAtom AtomicNumber int 0 Connections string {{}} Fractional double {{0.0 0.0 0.0}} Name string {{}} Site int 1 WyckoffPosition int -1 @end @data 6 {} {0.356641688425 0.540563655327 0.422727313477} C1 1 1 14 {} {0.33757419174 0.5075146683 0.533754247292} Si1 2 1 14 {} {0.411692264295 0.583084141225 0.418399901893} Si2 3 1 8 {} {0.340883426276 0.567810943013 0.609000218136} O1 4 1 8 {} {0.284695468956 0.48560877396 0.525798633969} O2 5 1 6 {} {0.369263818512 0.431572490602 0.569160211182} C2 6 1 6 {} {0.460703039622 0.525754017495 0.412059624155} C3 7 1 8 {} {0.413487277327 0.627095946423 0.513728710616} O3 8 1 8 {} {0.412123248832 0.633803044914 0.330499034746} O4 9 1 14 {} {0.23230630492 0.491166945733 0.556421988142} Si3 10 1 7 {} {0.212732169876 0.412427977251 0.587879138419} N1 11 1 14 {} {0.176696901319 0.408121052791 0.679733867047} Si4 12 1 14 {} {0.22833205101 0.342431721683 0.523884353302} Si5 13 1 7 {} {0.229534977372 0.354882410694 0.410307368425} N2 14 1 7 {} {0.129185271064 0.45646248056 0.672568393746} N3 15 1 1 {} {0.356228538832 0.50013225296 0.372690597215} H1 16 1 1 {} {0.331692823727 0.577668606028 0.40070849412} H2 17 1 1 {} {0.364648398578 0.599949140668 0.59595488413} H3 18 1 1 {} {0.365936239672 0.390565003395 0.520678229523} H4 19 1 1 {} {0.356593066885 0.413502362873 0.633666515543} H5 20 1 1 {} {0.404979341128 0.442541145106 0.577437606127} H6 21 1 1 {} {0.492647867585 0.552849910228 0.41155726747} H7 22 1 1 {} {0.459338373515 0.494857944255 0.351440129276} H8 23 1 1 {} {0.461535878141 0.491762052021 0.469517339223} H9 24 1 1 {} {0.438741663191 0.656423818199 0.523872864299} H10 25 1 1 {} {0.440564761697 0.642415996423 0.30200665265} H11 26 1 1 {} {0.226589968455 0.536821293249 0.63442096271} H12 27 1 1 {} {0.206844442016 0.5177385234 0.478672473875} H13 28 1 1 {} {0.163817309418 0.336411387768 0.687879639375} H14 29 1 1 {} {0.199748875707 0.432468762582 0.761625731477} H15 30 1 1 {} {0.274252190863 0.320740581222 0.548796378864} H16 31 1 1 {} {0.195199923418 0.2890261356 0.544205943401} H17 32 1 1 {} {0.255985019181 0.37881454225 0.382350544387} H18 33 1 1 {} {0.201050837671 0.365498906274 0.376291865777} H19 34 1 1 {} {0.129001432405 0.504059902367 0.696298420218} H20 35 1 1 {} {0.106516971796 0.450480109925 0.622777934054} H21 36 1 6 {} {0.585306965386 0.342141642022 0.309183358386} C4 37 1 14 {} {0.58066515272 0.375494052215 0.426232309608} Si6 38 1 14 {} {0.569358685738 0.25305630357 0.291245514546} Si7 39 1 8 {} {0.609302746831 0.326564500278 0.494215440031} O5 40 1 8 {} {0.603144678679 0.450723773575 0.431121492339} O6 41 1 6 {} {0.521584127037 0.383653742172 0.463039011502} C5 42 1 6 {} {0.508458903361 0.242416404231 0.267643281743} C6 43 1 8 {} {0.584644596841 0.214417271332 0.385496463698} O7 44 1 8 {} {0.59907441725 0.216039586311 0.211389475526} O8 45 1 14 {} {0.646889701887 0.495479566294 0.459790265552} Si8 46 1 7 {} {0.631379082335 0.576540609656 0.486885684933} N4 47 1 14 {} {0.637892848162 0.604260034461 0.597251945937} Si9 48 1 14 {} {0.607469478561 0.630237698895 0.407883863126} Si10 49 1 7 {} {0.618607415754 0.610978503791 0.297988371206} N5 50 1 7 {} {0.690605412863 0.624040148247 0.633622339533} N6 51 1 1 {} {0.565887529742 0.373879215295 0.263209001033} H22 52 1 1 {} {0.620625316628 0.347249785604 0.289576701642} H23 53 1 1 {} {0.607616913626 0.279436714219 0.476688268286} H24 54 1 1 {} {0.502672251942 0.416374385713 0.418127031001} H25 55 1 1 {} {0.520105433152 0.405697040385 0.53015897307} H26 56 1 1 {} {0.504549450565 0.334987857863 0.465301210071} H27 57 1 1 {} {0.499143667918 0.18930097266 0.263005704247} H28 58 1 1 {} {0.499195226448 0.266561139056 0.20426852681} H29 59 1 1 {} {0.488033674097 0.265289046051 0.320402959457} H30 60 1 1 {} {0.587335564125 0.166064163444 0.383256910979} H31 61 1 1 {} {0.585870460954 0.212015496042 0.152642286602} H32 62 1 1 {} {0.668915716053 0.466776937602 0.540457590105} H33 63 1 1 {} {0.678616408007 0.495147926615 0.383130648519} H34 64 1 1 {} {0.610366369555 0.666322732292 0.603851380913} H35 65 1 1 {} {0.621514192596 0.551293013254 0.658902740545} H36 66 1 1 {} {0.557717085073 0.629449213142 0.415480947123} H37 67 1 1 {} {0.624442081615 0.699098934971 0.425906210822} H38 68 1 1 {} {0.602229551156 0.57257088713 0.268206324584} H39 69 1 1 {} {0.65013762981 0.614537710326 0.27398283697} H40 70 1 1 {} {0.712069831065 0.586799943377 0.651433488846} H41 71 1 1 {} {0.707637371223 0.663200716367 0.606334265096} H42 72 1 @end @Columns Cell Constraints string {a b c A B G} Origin int {{0 0 0}} Parameters double {{10.0 10.0 10.0 90.0 90.0 90.0}} PrimitiveData double {{{1.0 0.0 0.0} {0.0 1.0 0.0} {0.0 0.0 1.0}}} RotationMatrix double {{{1.0 0.0 0.0} {0.0 1.0 0.0} {0.0 0.0 1.0}}} SpaceGroup string P1 SpaceGroupNumber int 1 ToCartesians double {{{10.0 0.0 0.0} {0.0 10.0 0.0} {0.0 0.0 10.0}}} ToFractionals double {{{0.10000000000000001 0.0 0.0} {0.0 0.10000000000000001 0.0} {0.0 0.0 0.10000000000000001}}} @end @data {a b c A B G} {0 0 0} {30 20 15 90 90 90} {{1 0 0} {0 1 0} {0 0 1}} {{1 0 0} {0 1 0} {0 0 1}} P1 1 {{30 0 0} {0 20 0} {0 0 15}} {{0.0333333333333 0 0} {0 0.05 0} {0 0 0.0666666666667}} @end @Columns AsymmetricBond Atom1 reference AsymmetricAtom Atom2 reference AsymmetricAtom Key int 0 Order int 0 @end @data 56 41 0 0 50 47 0 0 2 0 0 0 58 42 0 0 44 38 0 0 70 50 0 0 69 49 0 0 34 14 0 0 48 46 0 0 52 36 0 0 6 2 0 0 49 48 0 0 62 45 0 0 21 6 0 0 7 2 0 0 22 6 0 0 8 2 0 0 27 9 0 0 33 13 0 0 37 36 0 0 23 6 0 0 59 42 0 0 12 10 0 0 54 41 0 0 51 36 0 0 61 44 0 0 16 0 0 0 19 5 0 0 20 5 0 0 13 12 0 0 1 0 0 0 43 38 0 0 10 9 0 0 68 49 0 0 53 39 0 0 3 1 0 0 47 46 0 0 60 43 0 0 4 1 0 0 18 5 0 0 5 1 0 0 67 48 0 0 26 9 0 0 32 13 0 0 46 45 0 0 17 3 0 0 11 10 0 0 9 4 0 0 15 0 0 0 25 8 0 0 31 12 0 0 42 38 0 0 64 47 0 0 24 7 0 0 29 11 0 0 40 37 0 0 39 37 0 0 41 37 0 0 66 48 0 0 57 42 0 0 38 36 0 0 65 47 0 0 30 12 0 0 28 11 0 0 71 50 0 0 45 40 0 0 35 14 0 0 55 41 0 0 14 11 0 0 63 45 0 0 @end @Columns Bond AsymmetricBond reference AsymmetricBond Atom1 reference Atom Atom2 reference Atom CellOffset2 int {{0 0 0}} Key int 0 @end @data 0 56 41 {0 0 0} 0 1 47 50 {0 0 0} 0 2 0 2 {0 0 0} 0 3 58 42 {0 0 0} 0 4 38 44 {0 0 0} 0 5 50 70 {0 0 0} 0 6 49 69 {0 0 0} 0 7 14 34 {0 0 0} 0 8 46 48 {0 0 0} 0 9 36 52 {0 0 0} 0 10 2 6 {0 0 0} 0 11 48 49 {0 0 0} 0 12 45 62 {0 0 0} 0 13 21 6 {0 0 0} 0 14 7 2 {0 0 0} 0 15 22 6 {0 0 0} 0 16 8 2 {0 0 0} 0 17 9 27 {0 0 0} 0 18 13 33 {0 0 0} 0 19 36 37 {0 0 0} 0 20 23 6 {0 0 0} 0 21 59 42 {0 0 0} 0 22 10 12 {0 0 0} 0 23 41 54 {0 0 0} 0 24 51 36 {0 0 0} 0 25 44 61 {0 0 0} 0 26 0 16 {0 0 0} 0 27 5 19 {0 0 0} 0 28 5 20 {0 0 0} 0 29 12 13 {0 0 0} 0 30 0 1 {0 0 0} 0 31 38 43 {0 0 0} 0 32 10 9 {0 0 0} 0 33 49 68 {0 0 0} 0 34 39 53 {0 0 0} 0 35 3 1 {0 0 0} 0 36 46 47 {0 0 0} 0 37 43 60 {0 0 0} 0 38 4 1 {0 0 0} 0 39 18 5 {0 0 0} 0 40 1 5 {0 0 0} 0 41 48 67 {0 0 0} 0 42 9 26 {0 0 0} 0 43 13 32 {0 0 0} 0 44 45 46 {0 0 0} 0 45 3 17 {0 0 0} 0 46 10 11 {0 0 0} 0 47 4 9 {0 0 0} 0 48 15 0 {0 0 0} 0 49 8 25 {0 0 0} 0 50 12 31 {0 0 0} 0 51 38 42 {0 0 0} 0 52 64 47 {0 0 0} 0 53 7 24 {0 0 0} 0 54 11 29 {0 0 0} 0 55 40 37 {0 0 0} 0 56 39 37 {0 0 0} 0 57 37 41 {0 0 0} 0 58 66 48 {0 0 0} 0 59 42 57 {0 0 0} 0 60 38 36 {0 0 0} 0 61 65 47 {0 0 0} 0 62 30 12 {0 0 0} 0 63 28 11 {0 0 0} 0 64 50 71 {0 0 0} 0 65 45 40 {0 0 0} 0 66 14 35 {0 0 0} 0 67 55 41 {0 0 0} 0 68 11 14 {0 0 0} 0 69 63 45 {0 0 0} 0 @end @Columns Subset Color string {{#65d9f0}} Criteria string {{}} DisplayLine int 0 IeqJ int 1 IgtJ int 0 IltJ int 0 Length int 1 Name string {{}} Table string {{}} Type string atom UseColor int 0 @end @data @end