iterations/neb0_image05_iter2.sci output for 43: 3.6A-->1.6A 715(amd-3) Si-CH2H...H2HC-Si two dimer closed (TSS)
Status: finished#MD System 2.0 @Title neb0_image05 @Columns AsymmetricAtom AtomicNumber int 0 Connections string {{}} Fractional double {{0.0 0.0 0.0}} Name string {{}} Site int 1 WyckoffPosition int -1 @end @data 6 {} {0.356630155223 0.540635519399 0.422693157816} C1 1 1 14 {} {0.337592162311 0.507631998415 0.533748841782} Si1 2 1 14 {} {0.411870351817 0.582754361951 0.418506900008} Si2 3 1 8 {} {0.340832741272 0.567904911658 0.609014580483} O1 4 1 8 {} {0.284673167212 0.485644655479 0.525813319649} O2 5 1 6 {} {0.369227537702 0.431667329875 0.569143449148} C2 6 1 6 {} {0.460939375683 0.525158222017 0.412233345856} C3 7 1 8 {} {0.413469255627 0.627173470528 0.513603729729} O3 8 1 8 {} {0.412191817497 0.63364101656 0.330720890881} O4 9 1 14 {} {0.232341894537 0.491257829311 0.556422154165} Si3 10 1 7 {} {0.212692711593 0.412537331225 0.587854869687} N1 11 1 14 {} {0.176656366645 0.408182589768 0.679699135285} Si4 12 1 14 {} {0.228297480326 0.342526158815 0.523919191567} Si5 13 1 7 {} {0.229515803488 0.354892134693 0.410302730582} N2 14 1 7 {} {0.129149702127 0.456517497523 0.672518434293} N3 15 1 1 {} {0.356181600587 0.500202520871 0.372659370464} H1 16 1 1 {} {0.331697546123 0.577807538811 0.400694226737} H2 17 1 1 {} {0.36461966899 0.600037660882 0.595958347041} H3 18 1 1 {} {0.365906582199 0.390669168239 0.520645257099} H4 19 1 1 {} {0.356552747067 0.413610383765 0.633647203572} H5 20 1 1 {} {0.404939460693 0.442644436668 0.577436698853} H6 21 1 1 {} {0.492722533406 0.55280104741 0.411457998712} H7 22 1 1 {} {0.459515459775 0.494563043156 0.351260269585} H8 23 1 1 {} {0.461905106427 0.49099537813 0.469661026393} H9 24 1 1 {} {0.438726743389 0.656478892952 0.523890701281} H10 25 1 1 {} {0.440534154025 0.642450524175 0.301950326977} H11 26 1 1 {} {0.226553983077 0.536902452267 0.63443653863} H12 27 1 1 {} {0.20681763161 0.51780122566 0.478725179428} H13 28 1 1 {} {0.163764591909 0.336486442359 0.687832521919} H14 29 1 1 {} {0.199691988826 0.432521032931 0.761600302791} H15 30 1 1 {} {0.274223014147 0.320836846919 0.548828684242} H16 31 1 1 {} {0.195163168234 0.289107778003 0.544193796094} H17 32 1 1 {} {0.25594893895 0.378893519414 0.382363396642} H18 33 1 1 {} {0.201040628764 0.365557514418 0.376296168783} H19 34 1 1 {} {0.128951814023 0.504103334539 0.696299874956} H20 35 1 1 {} {0.106476221016 0.450582230333 0.622754401631} H21 36 1 6 {} {0.58533169345 0.342023640115 0.30917264967} C4 37 1 14 {} {0.580554334044 0.375589813641 0.426155157943} Si6 38 1 14 {} {0.569380477307 0.252936753803 0.291262756614} Si7 39 1 8 {} {0.609181770466 0.326519711319 0.494179352133} O5 40 1 8 {} {0.603203573468 0.450630344148 0.431178444414} O6 41 1 6 {} {0.521300711323 0.384288200575 0.462783665312} C5 42 1 6 {} {0.508478537716 0.242332799763 0.267623461504} C6 43 1 8 {} {0.584662560142 0.214305832382 0.385534931332} O7 44 1 8 {} {0.599098786191 0.215940751647 0.211374820548} O8 45 1 14 {} {0.646932870714 0.495475875839 0.459831498246} Si8 46 1 7 {} {0.631436784738 0.576557874022 0.486897675591} N4 47 1 14 {} {0.637692400694 0.604107812924 0.597213418896} Si9 48 1 14 {} {0.607552076318 0.630212057094 0.407437027976} Si10 49 1 7 {} {0.618543378003 0.611167852473 0.297841991748} N5 50 1 7 {} {0.690707106103 0.623918720428 0.63336553053} N6 51 1 1 {} {0.565916128664 0.373791560977 0.263229539955} H22 52 1 1 {} {0.620658998918 0.347169156391 0.289582610475} H23 53 1 1 {} {0.607630330567 0.279379579542 0.476696500249} H24 54 1 1 {} {0.502187894075 0.417260568878 0.418233796219} H25 55 1 1 {} {0.520084826041 0.405772017926 0.530304603835} H26 56 1 1 {} {0.504512836552 0.335382373882 0.465170088204} H27 57 1 1 {} {0.499141766438 0.189229436717 0.262966849814} H28 58 1 1 {} {0.499248045815 0.266515225773 0.204247279147} H29 59 1 1 {} {0.48805606096 0.265261462618 0.320350535314} H30 60 1 1 {} {0.587319079441 0.165959048472 0.383288199103} H31 61 1 1 {} {0.585889492629 0.211929298429 0.152654128265} H32 62 1 1 {} {0.668938668139 0.466662465353 0.540474089776} H33 63 1 1 {} {0.678665318101 0.495048260202 0.383185662363} H34 64 1 1 {} {0.610413335306 0.666364727184 0.604012349378} H35 65 1 1 {} {0.621558809066 0.551191947956 0.659239400986} H36 66 1 1 {} {0.557816854765 0.629297731948 0.415602413209} H37 67 1 1 {} {0.624481636782 0.698987694733 0.426125614775} H38 68 1 1 {} {0.602287187046 0.572421764729 0.268326950555} H39 69 1 1 {} {0.650225002335 0.614478750552 0.274033071554} H40 70 1 1 {} {0.712074965429 0.586765340133 0.651420765851} H41 71 1 1 {} {0.707653563642 0.663071877714 0.606302455239} H42 72 1 @end @Columns Cell Constraints string {a b c A B G} Origin int {{0 0 0}} Parameters double {{10.0 10.0 10.0 90.0 90.0 90.0}} PrimitiveData double {{{1.0 0.0 0.0} {0.0 1.0 0.0} {0.0 0.0 1.0}}} RotationMatrix double {{{1.0 0.0 0.0} {0.0 1.0 0.0} {0.0 0.0 1.0}}} SpaceGroup string P1 SpaceGroupNumber int 1 ToCartesians double {{{10.0 0.0 0.0} {0.0 10.0 0.0} {0.0 0.0 10.0}}} ToFractionals double {{{0.10000000000000001 0.0 0.0} {0.0 0.10000000000000001 0.0} {0.0 0.0 0.10000000000000001}}} @end @data {a b c A B G} {0 0 0} {30 20 15 90 90 90} {{1 0 0} {0 1 0} {0 0 1}} {{1 0 0} {0 1 0} {0 0 1}} P1 1 {{30 0 0} {0 20 0} {0 0 15}} {{0.0333333333333 0 0} {0 0.05 0} {0 0 0.0666666666667}} @end @Columns AsymmetricBond Atom1 reference AsymmetricAtom Atom2 reference AsymmetricAtom Key int 0 Order int 0 @end @data 56 41 0 0 50 47 0 0 2 0 0 0 58 42 0 0 44 38 0 0 70 50 0 0 69 49 0 0 34 14 0 0 48 46 0 0 52 36 0 0 6 2 0 0 49 48 0 0 62 45 0 0 21 6 0 0 7 2 0 0 22 6 0 0 8 2 0 0 27 9 0 0 33 13 0 0 37 36 0 0 23 6 0 0 59 42 0 0 12 10 0 0 54 41 0 0 51 36 0 0 61 44 0 0 16 0 0 0 19 5 0 0 20 5 0 0 13 12 0 0 1 0 0 0 43 38 0 0 10 9 0 0 68 49 0 0 53 39 0 0 3 1 0 0 47 46 0 0 60 43 0 0 4 1 0 0 18 5 0 0 5 1 0 0 67 48 0 0 26 9 0 0 32 13 0 0 46 45 0 0 17 3 0 0 11 10 0 0 9 4 0 0 15 0 0 0 25 8 0 0 31 12 0 0 42 38 0 0 64 47 0 0 24 7 0 0 29 11 0 0 40 37 0 0 39 37 0 0 41 37 0 0 66 48 0 0 57 42 0 0 38 36 0 0 65 47 0 0 30 12 0 0 28 11 0 0 71 50 0 0 45 40 0 0 35 14 0 0 55 41 0 0 14 11 0 0 63 45 0 0 @end @Columns Bond AsymmetricBond reference AsymmetricBond Atom1 reference Atom Atom2 reference Atom CellOffset2 int {{0 0 0}} Key int 0 @end @data 0 56 41 {0 0 0} 0 1 47 50 {0 0 0} 0 2 0 2 {0 0 0} 0 3 58 42 {0 0 0} 0 4 38 44 {0 0 0} 0 5 50 70 {0 0 0} 0 6 49 69 {0 0 0} 0 7 14 34 {0 0 0} 0 8 46 48 {0 0 0} 0 9 36 52 {0 0 0} 0 10 2 6 {0 0 0} 0 11 48 49 {0 0 0} 0 12 45 62 {0 0 0} 0 13 21 6 {0 0 0} 0 14 7 2 {0 0 0} 0 15 22 6 {0 0 0} 0 16 8 2 {0 0 0} 0 17 9 27 {0 0 0} 0 18 13 33 {0 0 0} 0 19 36 37 {0 0 0} 0 20 23 6 {0 0 0} 0 21 59 42 {0 0 0} 0 22 10 12 {0 0 0} 0 23 41 54 {0 0 0} 0 24 51 36 {0 0 0} 0 25 44 61 {0 0 0} 0 26 0 16 {0 0 0} 0 27 5 19 {0 0 0} 0 28 5 20 {0 0 0} 0 29 12 13 {0 0 0} 0 30 0 1 {0 0 0} 0 31 38 43 {0 0 0} 0 32 10 9 {0 0 0} 0 33 49 68 {0 0 0} 0 34 39 53 {0 0 0} 0 35 3 1 {0 0 0} 0 36 46 47 {0 0 0} 0 37 43 60 {0 0 0} 0 38 4 1 {0 0 0} 0 39 18 5 {0 0 0} 0 40 1 5 {0 0 0} 0 41 48 67 {0 0 0} 0 42 9 26 {0 0 0} 0 43 13 32 {0 0 0} 0 44 45 46 {0 0 0} 0 45 3 17 {0 0 0} 0 46 10 11 {0 0 0} 0 47 4 9 {0 0 0} 0 48 15 0 {0 0 0} 0 49 8 25 {0 0 0} 0 50 12 31 {0 0 0} 0 51 38 42 {0 0 0} 0 52 64 47 {0 0 0} 0 53 7 24 {0 0 0} 0 54 11 29 {0 0 0} 0 55 40 37 {0 0 0} 0 56 39 37 {0 0 0} 0 57 37 41 {0 0 0} 0 58 66 48 {0 0 0} 0 59 42 57 {0 0 0} 0 60 38 36 {0 0 0} 0 61 65 47 {0 0 0} 0 62 30 12 {0 0 0} 0 63 28 11 {0 0 0} 0 64 50 71 {0 0 0} 0 65 45 40 {0 0 0} 0 66 14 35 {0 0 0} 0 67 55 41 {0 0 0} 0 68 11 14 {0 0 0} 0 69 63 45 {0 0 0} 0 @end @Columns Subset Color string {{#65d9f0}} Criteria string {{}} DisplayLine int 0 IeqJ int 1 IgtJ int 0 IltJ int 0 Length int 1 Name string {{}} Table string {{}} Type string atom UseColor int 0 @end @data @end