iterations/neb0_image05_iter21.sci output for 43: 3.6A-->1.6A 715(amd-3) Si-CH2H...H2HC-Si two dimer closed (TSS)
Status: finished#MD System 2.0 @Title neb0_image05 @Columns AsymmetricAtom AtomicNumber int 0 Connections string {{}} Fractional double {{0.0 0.0 0.0}} Name string {{}} Site int 1 WyckoffPosition int -1 @end @data 6 {} {0.356623277574 0.540526272642 0.422735432102} C1 1 1 14 {} {0.337589443543 0.507428933147 0.533795575262} Si1 2 1 14 {} {0.411563911362 0.583353652074 0.418270824598} Si2 3 1 8 {} {0.340909793252 0.567699490186 0.609009548488} O1 4 1 8 {} {0.284703899576 0.485560159932 0.525785892923} O2 5 1 6 {} {0.369292461298 0.431479133799 0.569169576107} C2 6 1 6 {} {0.460592864562 0.526149238696 0.411958285038} C3 7 1 8 {} {0.413446223212 0.627136602938 0.513878465554} O3 8 1 8 {} {0.411990818628 0.634085747026 0.330259489891} O4 9 1 14 {} {0.232321074776 0.491052127962 0.556413402693} Si3 10 1 7 {} {0.212764315438 0.41233984699 0.587894060539} N1 11 1 14 {} {0.176735057224 0.408060355456 0.679758483384} Si4 12 1 14 {} {0.228361104092 0.342362494233 0.523886303625} Si5 13 1 7 {} {0.229546343278 0.354857959905 0.410310595276} N2 14 1 7 {} {0.129227570012 0.45638930423 0.6725990186} N3 15 1 1 {} {0.356290101273 0.50007384931 0.372709439369} H1 16 1 1 {} {0.331622648074 0.577537452528 0.4007037111} H2 17 1 1 {} {0.364690245891 0.599866195474 0.595942563155} H3 18 1 1 {} {0.365966941314 0.390453195642 0.520705601572} H4 19 1 1 {} {0.356634652421 0.413396254492 0.633684591092} H5 20 1 1 {} {0.405005697517 0.442441479939 0.577430407646} H6 21 1 1 {} {0.492600948066 0.553071064274 0.411590577202} H7 22 1 1 {} {0.459135710049 0.495117758163 0.351410854778} H8 23 1 1 {} {0.461141378409 0.492386314231 0.469610172015} H9 24 1 1 {} {0.438767235525 0.656392858565 0.523876614548} H10 25 1 1 {} {0.44058247546 0.642389922109 0.302062414561} H11 26 1 1 {} {0.226614005508 0.536745264905 0.634415540012} H12 27 1 1 {} {0.206860082832 0.517670372388 0.478621466521} H13 28 1 1 {} {0.163867893983 0.336338768303 0.687935900704} H14 29 1 1 {} {0.199805490048 0.432416081541 0.761647420649} H15 30 1 1 {} {0.274292049718 0.320636644311 0.548759276988} H16 31 1 1 {} {0.195233481001 0.288931870459 0.544210194404} H17 32 1 1 {} {0.256018874196 0.378740187309 0.382321422114} H18 33 1 1 {} {0.201071100334 0.365444816291 0.37628456939} H19 34 1 1 {} {0.129047945035 0.504007724341 0.696282840881} H20 35 1 1 {} {0.106568263642 0.450390423976 0.622834124713} H21 36 1 6 {} {0.585306124627 0.342224991492 0.309151990389} C4 37 1 14 {} {0.580828828516 0.375359812522 0.426302030188} Si6 38 1 14 {} {0.569333028965 0.253145777915 0.291227322105} Si7 39 1 8 {} {0.609537534379 0.326521811551 0.494272816301} O5 40 1 8 {} {0.603088425753 0.450796904493 0.431084597223} O6 41 1 6 {} {0.521729017323 0.383130282876 0.463172508467} C5 42 1 6 {} {0.50843939317 0.242497428166 0.267662832708} C6 43 1 8 {} {0.584628470823 0.214520926257 0.385480167357} O7 44 1 8 {} {0.599047251423 0.216144166826 0.211365951965} O8 45 1 14 {} {0.64685758912 0.495490305927 0.459815784062} Si8 46 1 7 {} {0.631322197925 0.576589943795 0.486773219561} N4 47 1 14 {} {0.637906931889 0.604363682007 0.597326697482} Si9 48 1 14 {} {0.607404462355 0.630255241299 0.407984357907} Si10 49 1 7 {} {0.618586680703 0.610850066932 0.298351129473} N5 50 1 7 {} {0.690689096182 0.624232663072 0.633889060559} N6 51 1 1 {} {0.565861017487 0.373983986446 0.263228963908} H22 52 1 1 {} {0.620606094361 0.34733418534 0.289532200263} H23 53 1 1 {} {0.60762874457 0.279455528899 0.476712517639} H24 54 1 1 {} {0.503034494774 0.415683290922 0.41777775469} H25 55 1 1 {} {0.520146107306 0.405579270742 0.530237423267} H26 56 1 1 {} {0.504646940959 0.334441723688 0.465553846773} H27 57 1 1 {} {0.499150137033 0.189362420432 0.26304367475} H28 58 1 1 {} {0.499137668973 0.266615867336 0.204291031992} H29 59 1 1 {} {0.488009403122 0.265326699411 0.320455840839} H30 60 1 1 {} {0.587352134881 0.16619294874 0.383217195659} H31 61 1 1 {} {0.585856028358 0.212106701976 0.152650330004} H32 62 1 1 {} {0.668885573718 0.466877775623 0.540404170986} H33 63 1 1 {} {0.678567603165 0.495234930304 0.383060582118} H34 64 1 1 {} {0.610340103608 0.666302888769 0.603670439561} H35 65 1 1 {} {0.621477546163 0.551360216431 0.658629932168} H36 66 1 1 {} {0.557641380855 0.629590699534 0.415403118114} H37 67 1 1 {} {0.624392657284 0.699162090096 0.425729470861} H38 68 1 1 {} {0.602136024157 0.572683522572 0.268072647195} H39 69 1 1 {} {0.650130568486 0.614615036556 0.273925003574} H40 70 1 1 {} {0.712037542659 0.586907606719 0.651418120126} H41 71 1 1 {} {0.707603772258 0.663255093691 0.606446915824} H42 72 1 @end @Columns Cell Constraints string {a b c A B G} Origin int {{0 0 0}} Parameters double {{10.0 10.0 10.0 90.0 90.0 90.0}} PrimitiveData double {{{1.0 0.0 0.0} {0.0 1.0 0.0} {0.0 0.0 1.0}}} RotationMatrix double {{{1.0 0.0 0.0} {0.0 1.0 0.0} {0.0 0.0 1.0}}} SpaceGroup string P1 SpaceGroupNumber int 1 ToCartesians double {{{10.0 0.0 0.0} {0.0 10.0 0.0} {0.0 0.0 10.0}}} ToFractionals double {{{0.10000000000000001 0.0 0.0} {0.0 0.10000000000000001 0.0} {0.0 0.0 0.10000000000000001}}} @end @data {a b c A B G} {0 0 0} {30 20 15 90 90 90} {{1 0 0} {0 1 0} {0 0 1}} {{1 0 0} {0 1 0} {0 0 1}} P1 1 {{30 0 0} {0 20 0} {0 0 15}} {{0.0333333333333 0 0} {0 0.05 0} {0 0 0.0666666666667}} @end @Columns AsymmetricBond Atom1 reference AsymmetricAtom Atom2 reference AsymmetricAtom Key int 0 Order int 0 @end @data 56 41 0 0 50 47 0 0 2 0 0 0 58 42 0 0 44 38 0 0 70 50 0 0 69 49 0 0 34 14 0 0 48 46 0 0 52 36 0 0 6 2 0 0 49 48 0 0 62 45 0 0 21 6 0 0 7 2 0 0 22 6 0 0 8 2 0 0 27 9 0 0 33 13 0 0 37 36 0 0 23 6 0 0 59 42 0 0 12 10 0 0 54 41 0 0 51 36 0 0 61 44 0 0 16 0 0 0 19 5 0 0 20 5 0 0 13 12 0 0 1 0 0 0 43 38 0 0 10 9 0 0 68 49 0 0 53 39 0 0 3 1 0 0 47 46 0 0 60 43 0 0 4 1 0 0 18 5 0 0 5 1 0 0 67 48 0 0 26 9 0 0 32 13 0 0 46 45 0 0 17 3 0 0 11 10 0 0 9 4 0 0 15 0 0 0 25 8 0 0 31 12 0 0 42 38 0 0 64 47 0 0 24 7 0 0 29 11 0 0 40 37 0 0 39 37 0 0 41 37 0 0 66 48 0 0 57 42 0 0 38 36 0 0 65 47 0 0 30 12 0 0 28 11 0 0 71 50 0 0 45 40 0 0 35 14 0 0 55 41 0 0 14 11 0 0 63 45 0 0 @end @Columns Bond AsymmetricBond reference AsymmetricBond Atom1 reference Atom Atom2 reference Atom CellOffset2 int {{0 0 0}} Key int 0 @end @data 0 56 41 {0 0 0} 0 1 47 50 {0 0 0} 0 2 0 2 {0 0 0} 0 3 58 42 {0 0 0} 0 4 38 44 {0 0 0} 0 5 50 70 {0 0 0} 0 6 49 69 {0 0 0} 0 7 14 34 {0 0 0} 0 8 46 48 {0 0 0} 0 9 36 52 {0 0 0} 0 10 2 6 {0 0 0} 0 11 48 49 {0 0 0} 0 12 45 62 {0 0 0} 0 13 21 6 {0 0 0} 0 14 7 2 {0 0 0} 0 15 22 6 {0 0 0} 0 16 8 2 {0 0 0} 0 17 9 27 {0 0 0} 0 18 13 33 {0 0 0} 0 19 36 37 {0 0 0} 0 20 23 6 {0 0 0} 0 21 59 42 {0 0 0} 0 22 10 12 {0 0 0} 0 23 41 54 {0 0 0} 0 24 51 36 {0 0 0} 0 25 44 61 {0 0 0} 0 26 0 16 {0 0 0} 0 27 5 19 {0 0 0} 0 28 5 20 {0 0 0} 0 29 12 13 {0 0 0} 0 30 0 1 {0 0 0} 0 31 38 43 {0 0 0} 0 32 10 9 {0 0 0} 0 33 49 68 {0 0 0} 0 34 39 53 {0 0 0} 0 35 3 1 {0 0 0} 0 36 46 47 {0 0 0} 0 37 43 60 {0 0 0} 0 38 4 1 {0 0 0} 0 39 18 5 {0 0 0} 0 40 1 5 {0 0 0} 0 41 48 67 {0 0 0} 0 42 9 26 {0 0 0} 0 43 13 32 {0 0 0} 0 44 45 46 {0 0 0} 0 45 3 17 {0 0 0} 0 46 10 11 {0 0 0} 0 47 4 9 {0 0 0} 0 48 15 0 {0 0 0} 0 49 8 25 {0 0 0} 0 50 12 31 {0 0 0} 0 51 38 42 {0 0 0} 0 52 64 47 {0 0 0} 0 53 7 24 {0 0 0} 0 54 11 29 {0 0 0} 0 55 40 37 {0 0 0} 0 56 39 37 {0 0 0} 0 57 37 41 {0 0 0} 0 58 66 48 {0 0 0} 0 59 42 57 {0 0 0} 0 60 38 36 {0 0 0} 0 61 65 47 {0 0 0} 0 62 30 12 {0 0 0} 0 63 28 11 {0 0 0} 0 64 50 71 {0 0 0} 0 65 45 40 {0 0 0} 0 66 14 35 {0 0 0} 0 67 55 41 {0 0 0} 0 68 11 14 {0 0 0} 0 69 63 45 {0 0 0} 0 @end @Columns Subset Color string {{#65d9f0}} Criteria string {{}} DisplayLine int 0 IeqJ int 1 IgtJ int 0 IltJ int 0 Length int 1 Name string {{}} Table string {{}} Type string atom UseColor int 0 @end @data @end