iterations/neb0_image05_iter3.sci output for 43: 3.6A-->1.6A 715(amd-3) Si-CH2H...H2HC-Si two dimer closed (TSS)
Status: finished#MD System 2.0 @Title neb0_image05 @Columns AsymmetricAtom AtomicNumber int 0 Connections string {{}} Fractional double {{0.0 0.0 0.0}} Name string {{}} Site int 1 WyckoffPosition int -1 @end @data 6 {} {0.356646417183 0.540629481414 0.422702319157} C1 1 1 14 {} {0.337560776725 0.507595322815 0.533747659224} Si1 2 1 14 {} {0.411837241808 0.582812058553 0.418477716951} Si2 3 1 8 {} {0.340845241687 0.567890470354 0.609010793933} O1 4 1 8 {} {0.284704320256 0.485648982224 0.525804207787} O2 5 1 6 {} {0.369242408414 0.431653769246 0.569150122305} C2 6 1 6 {} {0.460845476125 0.525343562083 0.412271023583} C3 7 1 8 {} {0.413482249641 0.627135940517 0.513600298682} O3 8 1 8 {} {0.412190887385 0.633638977442 0.330711581421} O4 9 1 14 {} {0.23230981896 0.491218277007 0.556436280882} Si3 10 1 7 {} {0.212704593074 0.412520268615 0.58785713234} N1 11 1 14 {} {0.176666598218 0.408189253971 0.679690474563} Si4 12 1 14 {} {0.228298466414 0.342527337071 0.52389565237} Si5 13 1 7 {} {0.229519778559 0.354888038414 0.410304134441} N2 14 1 7 {} {0.129152101174 0.456512115568 0.672535172895} N3 15 1 1 {} {0.356186404307 0.500184936398 0.37266188116} H1 16 1 1 {} {0.331704247537 0.577782416826 0.400699054183} H2 17 1 1 {} {0.364625043048 0.600027201272 0.595960538275} H3 18 1 1 {} {0.365910293547 0.390651045312 0.520649304082} H4 19 1 1 {} {0.356558472513 0.413592575538 0.633649533013} H5 20 1 1 {} {0.404945780014 0.442624793375 0.577438022492} H6 21 1 1 {} {0.492721076683 0.552789362309 0.411481309406} H7 22 1 1 {} {0.459491995184 0.494581218258 0.351257581494} H8 23 1 1 {} {0.461850765311 0.491140583459 0.469596229722} H9 24 1 1 {} {0.438728662414 0.656469707103 0.52388822461} H10 25 1 1 {} {0.440540383724 0.642445088342 0.301957374031} H11 26 1 1 {} {0.226563194379 0.536891514808 0.634431865473} H12 27 1 1 {} {0.206825987013 0.517793596536 0.478715881868} H13 28 1 1 {} {0.163773137107 0.336465411558 0.687841247091} H14 29 1 1 {} {0.199700191725 0.432510908287 0.761607965123} H15 30 1 1 {} {0.274229448931 0.320817832654 0.548823390629} H16 31 1 1 {} {0.195169339136 0.289091890157 0.544199499675} H17 32 1 1 {} {0.25595274674 0.378879087496 0.382366922501} H18 33 1 1 {} {0.201045840998 0.36554586414 0.376303297276} H19 34 1 1 {} {0.128961727948 0.504093002224 0.696299856488} H20 35 1 1 {} {0.106483507738 0.450562779414 0.622756301861} H21 36 1 6 {} {0.585329984707 0.342056860467 0.309185738086} C4 37 1 14 {} {0.58051948524 0.375516193173 0.426208562565} Si6 38 1 14 {} {0.569369216371 0.252954783572 0.291258177624} Si7 39 1 8 {} {0.609189811936 0.326540761113 0.494166851357} O5 40 1 8 {} {0.603211086052 0.450706285458 0.431155625044} O6 41 1 6 {} {0.521351402524 0.384175600989 0.462682767386} C5 42 1 6 {} {0.508477602587 0.242357784078 0.267624497916} C6 43 1 8 {} {0.584660697223 0.214326947429 0.385527727882} O7 44 1 8 {} {0.599098792876 0.215956867175 0.211384115942} O8 45 1 14 {} {0.646944172727 0.495450656052 0.459888006969} Si8 46 1 7 {} {0.631355686412 0.576563983372 0.486526042571} N4 47 1 14 {} {0.637930279818 0.604245182214 0.597452831846} Si9 48 1 14 {} {0.607520930615 0.63022170661 0.407978693946} Si10 49 1 7 {} {0.618581556759 0.61110500384 0.297721830124} N5 50 1 7 {} {0.690609102879 0.623899654658 0.633367968599} N6 51 1 1 {} {0.565909418735 0.373804955314 0.263217995304} H22 52 1 1 {} {0.620653444032 0.347180671106 0.289580272413} H23 53 1 1 {} {0.607625333225 0.279400653099 0.476693730767} H24 54 1 1 {} {0.502315720856 0.417028581997 0.418331630739} H25 55 1 1 {} {0.520081665003 0.405781273908 0.530303291313} H26 56 1 1 {} {0.504521550502 0.335365234831 0.465179932529} H27 57 1 1 {} {0.499140630724 0.189239285322 0.262973321648} H28 58 1 1 {} {0.499240311423 0.266519176502 0.204256518464} H29 59 1 1 {} {0.488053139256 0.265263419728 0.320357282241} H30 60 1 1 {} {0.587321831153 0.165973447598 0.383284703852} H31 61 1 1 {} {0.585884206327 0.211942889984 0.152644270121} H32 62 1 1 {} {0.668930851972 0.46668390098 0.54045283339} H33 63 1 1 {} {0.678651553395 0.495073437068 0.383171819477} H34 64 1 1 {} {0.610382664615 0.666369626267 0.603976172111} H35 65 1 1 {} {0.621532995886 0.55118696978 0.659185673092} H36 66 1 1 {} {0.55781049237 0.629320243057 0.415554636083} H37 67 1 1 {} {0.62447450048 0.698996494818 0.426050401327} H38 68 1 1 {} {0.602256962149 0.572414498511 0.268259887241} H39 69 1 1 {} {0.650242586234 0.614497991425 0.273986669491} H40 70 1 1 {} {0.712047020774 0.586816096371 0.651388794528} H41 71 1 1 {} {0.707630654877 0.663044534108 0.606327188717} H42 72 1 @end @Columns Cell Constraints string {a b c A B G} Origin int {{0 0 0}} Parameters double {{10.0 10.0 10.0 90.0 90.0 90.0}} PrimitiveData double {{{1.0 0.0 0.0} {0.0 1.0 0.0} {0.0 0.0 1.0}}} RotationMatrix double {{{1.0 0.0 0.0} {0.0 1.0 0.0} {0.0 0.0 1.0}}} SpaceGroup string P1 SpaceGroupNumber int 1 ToCartesians double {{{10.0 0.0 0.0} {0.0 10.0 0.0} {0.0 0.0 10.0}}} ToFractionals double {{{0.10000000000000001 0.0 0.0} {0.0 0.10000000000000001 0.0} {0.0 0.0 0.10000000000000001}}} @end @data {a b c A B G} {0 0 0} {30 20 15 90 90 90} {{1 0 0} {0 1 0} {0 0 1}} {{1 0 0} {0 1 0} {0 0 1}} P1 1 {{30 0 0} {0 20 0} {0 0 15}} {{0.0333333333333 0 0} {0 0.05 0} {0 0 0.0666666666667}} @end @Columns AsymmetricBond Atom1 reference AsymmetricAtom Atom2 reference AsymmetricAtom Key int 0 Order int 0 @end @data 56 41 0 0 50 47 0 0 2 0 0 0 58 42 0 0 44 38 0 0 70 50 0 0 69 49 0 0 34 14 0 0 48 46 0 0 52 36 0 0 6 2 0 0 49 48 0 0 62 45 0 0 21 6 0 0 7 2 0 0 22 6 0 0 8 2 0 0 27 9 0 0 33 13 0 0 37 36 0 0 23 6 0 0 59 42 0 0 12 10 0 0 54 41 0 0 51 36 0 0 61 44 0 0 16 0 0 0 19 5 0 0 20 5 0 0 13 12 0 0 1 0 0 0 43 38 0 0 10 9 0 0 68 49 0 0 53 39 0 0 3 1 0 0 47 46 0 0 60 43 0 0 4 1 0 0 18 5 0 0 5 1 0 0 67 48 0 0 26 9 0 0 32 13 0 0 46 45 0 0 17 3 0 0 11 10 0 0 9 4 0 0 15 0 0 0 25 8 0 0 31 12 0 0 42 38 0 0 64 47 0 0 24 7 0 0 29 11 0 0 40 37 0 0 39 37 0 0 41 37 0 0 66 48 0 0 57 42 0 0 38 36 0 0 65 47 0 0 30 12 0 0 28 11 0 0 71 50 0 0 45 40 0 0 35 14 0 0 55 41 0 0 14 11 0 0 63 45 0 0 @end @Columns Bond AsymmetricBond reference AsymmetricBond Atom1 reference Atom Atom2 reference Atom CellOffset2 int {{0 0 0}} Key int 0 @end @data 0 56 41 {0 0 0} 0 1 47 50 {0 0 0} 0 2 0 2 {0 0 0} 0 3 58 42 {0 0 0} 0 4 38 44 {0 0 0} 0 5 50 70 {0 0 0} 0 6 49 69 {0 0 0} 0 7 14 34 {0 0 0} 0 8 46 48 {0 0 0} 0 9 36 52 {0 0 0} 0 10 2 6 {0 0 0} 0 11 48 49 {0 0 0} 0 12 45 62 {0 0 0} 0 13 21 6 {0 0 0} 0 14 7 2 {0 0 0} 0 15 22 6 {0 0 0} 0 16 8 2 {0 0 0} 0 17 9 27 {0 0 0} 0 18 13 33 {0 0 0} 0 19 36 37 {0 0 0} 0 20 23 6 {0 0 0} 0 21 59 42 {0 0 0} 0 22 10 12 {0 0 0} 0 23 41 54 {0 0 0} 0 24 51 36 {0 0 0} 0 25 44 61 {0 0 0} 0 26 0 16 {0 0 0} 0 27 5 19 {0 0 0} 0 28 5 20 {0 0 0} 0 29 12 13 {0 0 0} 0 30 0 1 {0 0 0} 0 31 38 43 {0 0 0} 0 32 10 9 {0 0 0} 0 33 49 68 {0 0 0} 0 34 39 53 {0 0 0} 0 35 3 1 {0 0 0} 0 36 46 47 {0 0 0} 0 37 43 60 {0 0 0} 0 38 4 1 {0 0 0} 0 39 18 5 {0 0 0} 0 40 1 5 {0 0 0} 0 41 48 67 {0 0 0} 0 42 9 26 {0 0 0} 0 43 13 32 {0 0 0} 0 44 45 46 {0 0 0} 0 45 3 17 {0 0 0} 0 46 10 11 {0 0 0} 0 47 4 9 {0 0 0} 0 48 15 0 {0 0 0} 0 49 8 25 {0 0 0} 0 50 12 31 {0 0 0} 0 51 38 42 {0 0 0} 0 52 64 47 {0 0 0} 0 53 7 24 {0 0 0} 0 54 11 29 {0 0 0} 0 55 40 37 {0 0 0} 0 56 39 37 {0 0 0} 0 57 37 41 {0 0 0} 0 58 66 48 {0 0 0} 0 59 42 57 {0 0 0} 0 60 38 36 {0 0 0} 0 61 65 47 {0 0 0} 0 62 30 12 {0 0 0} 0 63 28 11 {0 0 0} 0 64 50 71 {0 0 0} 0 65 45 40 {0 0 0} 0 66 14 35 {0 0 0} 0 67 55 41 {0 0 0} 0 68 11 14 {0 0 0} 0 69 63 45 {0 0 0} 0 @end @Columns Subset Color string {{#65d9f0}} Criteria string {{}} DisplayLine int 0 IeqJ int 1 IgtJ int 0 IltJ int 0 Length int 1 Name string {{}} Table string {{}} Type string atom UseColor int 0 @end @data @end